Projects in Trac

• pymur : A Python interface to The Lemur Toolkit

• PyPubMed : A a library to assist handling of PubMed documents and collections.

• mapducer : A mapreduce implementation for (actual) clusters.

• GOGrapher : A GOGraph uses the Gene Ontology to create a network relating terms to each other and proteins to terms. Given a species name or the name of one of the origin databases for the GODB (and an aspect), a directed unweighted graph is constructed (a GODiGraph - using networkx).

• TurPPS : A project aimed at developing a discrete predator-prey automata system representing the migration of hatchling sea turtles from their natal beaches to the oceanic life stage.

• PLASTron : A sea turtle PLastron Analysis Software Tool.

• GOSteiner : A project developing a general measure of protein-group functional coherence, based on the Gene Ontology and utilizing GOGrapher.

• Gene Data Integrator : A project that brings together diverse sources of gene-related data into a database and provides programming and web interface tools.

• GOA data repository of training documents linking PubMed abstracts and GO annotations.

Projects not in Trac

To view the code for any of the following projects go to http://projects.dbbe.musc.edu/view