GOGrapher :: A Python library for GO network graph analysis and representation
0.0
GOGrapher is a python library that uses the Gene Ontology to create a network relating terms to each other and proteins to terms. Given a species name or the name of one of the origin databases for the GODB (and an aspect), a directed unweighted graph is constructed (a
GODiGraph using
https://networkx.lanl.gov). Then, the following utilities can be used:
- given a weighting class (that extends GOWeighter) all edges can be come weighted (creating a GOXDiGraph)
- a utility to convert from/to protein symbols to protein ids found in other listings
- permanent storage for a GO(X)DiGraph
